Track Awesome Cytodata Updates Weekly

A curated list of awesome cytodata resources https://www.cytodata.org/awesome-cytodata/

🏠 Home · 🔍 Search · 🔥 Feed · 📮 Subscribe · ❤️ Sponsor · 😺 cytodata/awesome-cytodata · ⭐ 97 · 🏷️ Miscellaneous

[ Daily / Weekly / Overview ]

Oct 12 - Oct 18, 2026

🌟 Purpose

• Centralize Knowledge: Provide a "one-stop shop" for foundational and state-of-the-art research.

• Lower Entry Barriers: Help new researchers navigate "Influential Papers" selected by the community.

• Promote Open Science: Highlight publicly available datasets and open-source pipelines.

• Standardize Discovery: Offer a professional, searchable index for DOIs and software repositories.

🚀 Key Features / 📚 The Literature Corpus

• Advanced Search: Real-time fuzzy searching via Fuse.js across titles, authors, journals, and abstracts.

• Author Formatting: Scientific citation style (Lastname, F. et al.) for professional scanning.

• Filtering: Sort by year, category (Methods, Biology, Reviews, etc.), or influential status.

• Direct Access: One-click DOI links to publisher pages.

🚀 Key Features / 💾 Dataset Index

• A curated table of massive public releases like the Cell Painting Gallery, JUMP-CP, and RxRx.

• Filterable by description and reference paper.

🚀 Key Features / 🛠️ Software Directory

• Catalog of community-standard tools including CellProfiler, DeepProfiler, and PyCytominer.

• Categorized by purpose (Feature Extraction, Data Engineering, etc.).

🛠️ Technical Architecture / 🛠️ Software Directory

• Frontend: React 19+ (ESM-based via CDN for zero-install development).

• Styling: Tailwind CSS for a clean, academic aesthetic.

• Search Engine: Fuse.js for client-side fuzzy indexing of JSON data.

• Data Layer: Flat JSON files in /data/ acting as a "Local Database" for easy community contributions.

• Deployment: Automated GitHub Actions workflow for validation and hosting.

🤝 Contributing / 🛠️ Software Directory

• Read the CONTRIBUTING.md guide.

• Run python3 scripts/add_resource.py paper or python3 scripts/add_resource.py dataset to add your entry (or edit the JSON files in public/data/ by hand).

• Open a Pull Request.