Track Awesome Healthcare Updates Daily
Curated list of awesome open source healthcare software, libraries, tools and resources.
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Jul 27, 2023
Contents / Machine learning
- PyHealth (⭐678) - A Deep Learning Python Toolkit for Healthcare Application.
Contents / Logistics
- OpenBoxes (⭐504) - an Open Source Inventory and Supply Chain Management System.
Jul 26, 2023
Contents / EHR
- ERPNext (⭐14k) - Modules that help manage patients, appointments, consultations, lab tests, and billing.
- HOSxP - Thai Hospital Information System that aims to ease the healthcare workflow of health centers and central hospitals.
Contents / Specifications
- Continuity of Care Record - Specifications for the older form of CCD - sometimes called a "C32".
Contents / Laboratory
- OpenELIS - Laboratory Information System for Global Health.
Contents / Frameworks
- CyclOps (⭐47) - Framework for healthcare ML implementation.
Contents / Applications
- Simple - For clinicians to track patients with high blood pressure.
Contents / Books
- Inspired EHRs (⭐102) - Ideas, designs, and techniques for designing an Electronic Health Record (EHR).
Contents / Data
- EDS_NLP (⭐88) - provides a set of spaCy components to extract information from clinical notes written in French
- eds-scikit (⭐23) - a tool to assist data scientists working on the AP-HP's Clinical Data Warehouse. It is specifically targeted for OMOP-standardized data.
Contents / Design
- Determinants of Health (⭐60) - Determinants of Health Visualization.
- Health Icons (⭐545) - A collection of open source icons for public health projects.
Contents / Machine learning
- MedicalGPT (⭐1k) - Training Your Own Medical GPT Model with ChatGPT Training Pipeline.
May 26, 2023
Contents / Frameworks
- Medblocks UI (⭐39) - Web Components for rapid development of openEHR and FHIR systems.
Contents / Libraries
- Datamol (⭐356) - Molecular Manipulation Made Easy. A light Python wrapper build on top of RDKit.
Contents / Data
- Atlas BI Library (⭐12) The unified report library.
Feb 01, 2023
Contents / Libraries
- Graphir (⭐44) - GraphQL interface over FHIR API
Jan 16, 2023
Contents / EHR
- Ozone HIS - The entreprise-grade integrated health information system built with OpenMRS 3
Contents / Imaging
- Slim (⭐83) - Interoperable web viewer and annotation tool for computational pathology.
Contents / Libraries
- ehrapy (⭐45) - Electronic Health Record analysis in Python.
- Hermes (⭐139) - a SNOMED CT terminology server.
Dec 11, 2022
Contents / EHR
- Medplum (⭐745) - Developer platform that enables flexible and rapid development of healthcare apps.
Contents / Specifications
- OHDSI OMOP Common Data Model - Standardized data model for many healthcare concepts, awesome Github presence including scripts for many major relational databases.
Contents / Imaging
- Omero (⭐175) - open source client/server system written in Java for visualizing, managing, and annotating microscope images and metadata
- OpenSlide (⭐341) - is a C library for reading whole slide image files.
- Viv (⭐229) - multiscale visualization of high-resolution multiplexed bioimaging data on the web.
Contents / Libraries
- Rust FHIR (⭐11) - Rust SDK for HL7 FHIR
Contents / Data
- Cedar (⭐5) - Open source tool for testing the strength of Electronic Clinical Quality Measure.
Sep 01, 2022
Contents / Integration
- Zato - A Python-based ESB and integration platform for healthcare interoperability, automation and orchestration.
Aug 18, 2022
Contents / Imaging
- Kheops - Open source platform for sharing medical images
Aug 05, 2022
Contents / Imaging
- Kaapana (⭐115) - Open source toolkit for state of the art platform provisioning in the field of medical data analysis.
Contents / Frameworks
- LinuxForHealth FHIR Server (⭐278) - Modular Java implementation of version 4 of the HL7 FHIR specification.
Contents / Libraries
- Asymmetrik FHIR API Server (⭐361) - A secure REST implementation for the HL7 FHIR Specification.
Jul 11, 2022
Contents / Libraries
- Python 835 Parser (⭐52) - A simple-to-use Python interface to EDI 835 Health Care Claim Payment and Remittance Advice files.
Jun 09, 2022
Contents / Frameworks
- Clinical Quality Language (⭐217) - Clinical Quality Language is a HL7 standard for the expression of clinical knowledge.
Contents / Libraries
- Android FHIR SDK (⭐352) - The Android FHIR SDK
- FHIRKit Client (⭐149) - Node FHIR client library.
- FHIRModels (⭐147) - FHIRModels is a Swift library for FHIR resource data models.
Contents / Integration
- Open eHealth Integration Platform (⭐146) - An extension of the Apache Camel routing and mediation engine
May 02, 2022
Contents / Frameworks
- Blaze (⭐108) - A FHIR Store with internal, fast CQL Evaluation Engine
- Sushi (⭐98) - a reference implementation command-line interpreter/compiler for FHIR
Contents / Integration
- Google HCLS Data Harmonization (⭐153) - an engine that converts data of one structure to another
Mar 14, 2022
Contents / EHR
- Ripple - NHS-funded, community led initiative working towards an integrated Digital Care Record Platform.
Contents / Imaging
- Dicoogle (⭐375) - Dicoogle is an extensible, platform-independent and open-source PACS
Contents / Machine learning
- MONAI (⭐4.5k) - AI Toolkit for Healthcare Imaging.
Mar 09, 2022
Contents / Libraries
- TorchXRayVision (⭐687) - A library for chest X-ray datasets and models. Including pre-trained models.
Aug 12, 2021
Contents / Imaging
- DICOMcloud (⭐200) - A standalone DICOMweb server with RESTful implementation of the DICOMweb/WADO services.
- DICOM Server (⭐355) - OSS Implementation of DICOMweb standard.
- Fiji - Open-source platform for biological-image analysis.
Contents / Frameworks
- FHIR Proxy (⭐66) - secure application that acts as an intermediary in the transfer of FHIR data to and from Azure API.
- FHIR Works on AWS (⭐291) - FHIR Works on AWS deployment.
Contents / Integration
- FHIR Converter (⭐313) - an open source project that enables conversion of health data from legacy formats to FHIR.
Contents / Hardware
- echOpen - Low-cost (affordable) echo-stethoscope.
Contents / Data
- OpenSAFELY - Secure analytics platform for Electronic Health Records in the NHS.
Apr 18, 2021
Contents / EHR
- HospitalRun - Helps provide the most modern Hospital Information System possible to the least resourced environments.
Contents / Specifications
- DICOM Standards Browser - Provides an effective way to learn the DICOM standard and inspect DICOM attributes.
Contents / Imaging
- Cornerstone (⭐1.9k) - Open source project with a goal to deliver a complete web based medical imaging platform.
Contents / Frameworks
- CareKit (⭐2.3k) - Open source software framework for creating apps that help people better understand and manage their health.
Contents / Libraries
- Evil-DICOM (⭐152) - C# DICOM Library.
- Python SMART on FHIR client (⭐499) - Flexible Python client for FHIR servers supporting the SMART on FHIR protocol.
Contents / Applications
- Intervention Engine (⭐29) - Provides a web-application for data-driven team huddles.
Contents / Datasets
- Medical Data for Machine Learning (⭐5.5k) - Curated list of medical data for machine learning.
Apr 12, 2021
Contents / Imaging
- Drishti (⭐159) - Tomography and electron-microscopy data visualizer for both scientists and lay people.
Apr 08, 2021
Contents / EHR
- Bahmni - Electronic Medical Record and hospital system.
- EHRBase OpenEHR Clinical Data Repository.
- EHRServer (⭐150) - CaboLabs EHRServer.
- OSCAR EMR - OSCAR McMaster Project.
Contents / Specifications
- OpenEHR - Open specification upon which software can be built.
Contents / Imaging
- OHIF (⭐2.5k) - OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker.
Contents / Dental
- Open Dental - Dental Practice Management Software.
Contents / Frameworks
- API Server (⭐104) - FHIR Server to support patient- and clinician-facing apps.
- Clinical Meteor project - Meteor for FDA, HIPAA, and HL7 compliant applications.
Contents / Libraries
- Archie (⭐47) - OpenEHR Library written in Java.
- DCMTK - DICOM Toolkit.
- dicom (⭐834) - High Performance DICOM Medical Image Parser in GoLang.
- Fellow Oak DICOM (⭐929) - DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono, and Unity.
- FHIR protocol buffers (⭐732) - A Google implementation of protocol buffers for FHIR.
- php-fhir (⭐101) - Tools for creating PHP classes from the HL7 FHIR Specification.
- pynetdicom (⭐437) - A Python implementation of the DICOM networking protocol.
Contents / Data
- Inferno (⭐91) - Open source tool that tests whether patients can access their health data through a standard interface.
Contents / Machine learning
- Healthcare.ai - Python and R tools for healthcare machine learning.
Contents / Logistics
- OpenLMIS - Open source, web-based, electronic logistics management information system (LMIS) software, purpose-built to manage health commodity supply chains.
Jan 04, 2021
Contents / Imaging
- InVesalius - Open source software for reconstruction of computed tomography and magnetic ressonance images.
Contents / Libraries
- FHIR .NET API (⭐735) - The official .NET API for HL7 FHIR.
- HAPI FHIR (⭐1.7k) - Java API for HL7 FHIR Clients and Servers.
Contents / Asset Management
- Tapirx (⭐26) - Networked medical device discovery and identification.
Contents / Logistics
- ID3C (⭐22) - Data logistics system enabling real-time genomic epidemiology.
Oct 06, 2020
Contents / EHR
- GNU Health - Electronic Medical Record, Hospital Management, and Health Information System.
- FreeMedForms EMR - Electronic Medical Record software.
- LibreHealth EHR - Clinically-focused Electronic Health Record System.
- OpenClinic (⭐25) - Medical Records System.
- OpenEMR - Electronic Health Records and Medical Practice Management application.
- OpenEyes - Electronic Medical Record application for ophthalmology.
- OpenMRS - Enterprise Electronic Medical Record System platform.
Contents / Specifications
- Continuity of Care Document - Continuity of Care Document specifications
- HL7 Version 2 - Specifications for all versions of HL7v2
- Open mHealth - Open Standard For Mobile Health Data.
- SMART on FHIR - Open standards based technology platform.
Contents / Imaging
- dcm4che - Clinical Image and Object Management.
- Horos - Medical image viewer.
- LibreHealth Radiology - Customized version of LibreHealth Toolkit with additional tools for radiology and imaging professionals.
- OpenREM - Radiation Exposure Monitoring for physicists.
- Orthanc - Lightweight DICOM server for healthcare and medical research.
- VTK - 3 dimensional visualization toolkit supporting a variety of algorithms and modeling techniques.
Contents / Dental
- OpenMolar - Dental Practice Management Software.
Contents / Frameworks
- FHIRBase - Storage based on the FHIR Standard.
- Opal - Framework for building clinical applications.
- Spark (⭐227) - Public domain FHIR server developed in C#.
Contents / Libraries
- MITK - The Medical Imaging Interaction Toolkit.
Contents / Integration
- NextGen Connect Integration Engine (⭐737) - The swiss army knife of healthcare integration.
Contents / Bioinformatics
- Bcbio (⭐941) - Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis.
- Wregex - Amino acid motif searching software with optional Position-Specific Scoring Matrix.
Contents / Data
- cTAKES - Natural Language Processing System for extraction of information from Electronic Medical Record clinical free-text.
- Snow Owl (⭐238) - Highly scalable, open source terminology server with revision-control capabilities and collaborative authoring platform features.
Sep 07, 2020
Contents / EHR
- Cottage Med - Electronic Medical Record software designed by physicians.
Contents / Nursing
- open-eObs - Observation and clinical assessment platform that offers a real-time view of all patients across a ward.
Contents / Data
- IHRIS - Health Information System for management of human resources for health.
Jun 24, 2020
Contents / EHR
- GNUmed - Electronic Medical Record software.
Apr 08, 2019
Contents / Frameworks
- FHIR Server for Azure (⭐1k) - A .NET Core implementation of the FHIR standard.
Nov 26, 2018
Contents / Libraries
- Hearth (⭐26) - A fast FHIR-compliant server focused on longitudinal data stores.
Oct 31, 2018
Contents / Libraries
- Node-hl7-parser (⭐34) - Open source version of Redox's HL7 v2 to schema-fied JSON parser.
Mar 04, 2018
Contents / Laboratory
- SENAITE - Laboratory Information Management System.
Feb 13, 2018
Contents / Imaging
- DICOM Web Viewer - JavaScript/HTML5-based DICOM viewer with standard tools and a focus on supporting various screen sizes.
Feb 08, 2018
Contents / PHR
- HealthLocker (⭐72) - Elixir-based personal health record.
Dec 05, 2017
Contents / Imaging
- Papaya (⭐494) - Pure JavaScript medical research image viewer.
May 17, 2017
Contents / EMPI
- MEDIC Client Registry RI (⭐13) - The Mohawk College MARC-HI/MEDIC Client Registry EMPI Implementation.
Apr 22, 2017
Contents / EHR
- MedinTux - French Medical Practice Management System.
- Open Hospital - Electronic Medical Record software for underprivileged rural hospitals.
Contents / Imaging
- 3D Slicer - Cross-platform application for analyzing, visualizing and understanding medical image data.
- ITK - Toolkit used for the development of image segmentation and image registration programs with leading-edge algorithms in 2 and 3 dimensions.
- ITK-SNAP - Interactive software for 3 dimensional image navigation, annotation, and automatic segmentation with an emphasis on user-friendliness.
Contents / Hardware
- OpenAPS - The Open Artificial Pancreas System project is an open and transparent effort to make safe and effective basic Artificial Pancreas System.
Contents / Data
- Caisis - Oncology research software with a Patient Data Management System.
Apr 20, 2017
Contents / Libraries
- Health data standards (⭐0) - Ruby library for generating and consuming various healthcare related formats. These include HITSP C32, QRDA Category I, and QRDA Category III.
Contents / Data
- Synthea Patient Generator (⭐1.8k) - Synthetic patient generator that models the medical history of synthetic patients.
Apr 11, 2017
Contents / Frameworks
- Intervention Engine FHIR Server (⭐104) - Generic FHIR server implementation in GoLang.
- Swift-SMART (⭐121) - Swift SMART on FHIR framework for iOS and OS X.
Apr 01, 2017
Contents / EHR
- Odoo Medical (⭐248) - Universal Health and Hospital Information System.
- openMAXIMS (⭐57) - Full Patient Administration System designed for the NHS.
Contents / Prescribing
- OpenEP (⭐19) - Suite of medicines management apps that improve the safety and efficiency of prescribing and medicines management.
Contents / Frameworks
- ResearchKit (⭐5.6k) - Software framework that makes it easy to create apps for medical research or for other research projects.
Contents / Libraries
- Python HL7 (⭐258) - Simple library for parsing messages of HL7 version 2.x into Python objects.
Contents / PHR
- Tidepool - Data platform to reduce the burden of Type 1 Diabetes.
Contents / Research
- i2b2 - Research data warehouse.
Contents / Integration
- OpenHIM - Health information mediator.
Contents / Hardware
- Gluco (⭐28) - Glucometer.
- Murgen - Ultrasound imaging development kit.
Contents / Bioinformatics
- ADAM (⭐953) - Genomics analysis platform.
- Galaxy - Open web-based platform for data intensive biomedical research.
Mar 31, 2017
Contents / Specifications
- FHIR - Fast Health Interoperability Resources.
Contents / Libraries
- fhir.js (⭐384) - JavaScript client for FHIR.
- Node HL7 (⭐50) - Node module that is bridged with the Java Hapi HL7 library.
- Ruby FHIR (⭐149) - FHIR client implementation in Ruby.
- Ruby HL7 (⭐96) - Ruby HL7 library.
Contents / Applications
- SMART Pediatric Growth Chart (⭐67) - Pediatric growth charts.
Contents / Research
- LabKey Server - Platform for Translational Research.