Track Awesome Healthcare Updates Weekly

Curated list of awesome open source healthcare software, libraries, tools and resources.

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[ Daily / Weekly / Overview ]

Nov 09 - Nov 15, 2026

Contents / EHR

• Akello (⭐42) - Integrated Mental Health Infrastructure

• Beda EMR (⭐132) - EMR built natively on FHIR.

• BHIMA (⭐234) - Hospital information and accounting system for rural hospitals.

• CARE (⭐418) - Digital public good for hospital administration and decentralized patient care.

• FerroEHR (⭐85) - openEHR Clinical Data Repository written in Rust, with ITS-REST and AQL support on PostgreSQL.

• GitEHR (⭐6) - Patient-owned, self-hostable EHR stored as plain-text files in a Git repository. Append-only journal, immutable documents, offline-first, no database.

• HasteHealth (⭐85) - Scalable FHIR server and clinical data repository.

• ICTHospital (⭐116) - Hospital management software with built-in unified communications, built on Laravel.

• Marley (⭐555) - Health information system built on the Frappe framework.

• Open Hospital (⭐638) - Electronic Medical Record software for underprivileged rural hospitals.

Contents / Scribe

• Phlox (⭐110) - Open source (MIT), self-hosted AI medical scribe with realtime note drafting, RAG, and MCP-extensible agents; runs as a desktop app or Docker image.

Contents / Imaging

• Cornerstone3D (⭐1.2k) - JavaScript libraries for building web-based medical imaging platforms.

• dcm2niix (⭐1.2k) - DICOM to NIfTI converter.

• highdicom (⭐241) - High-level DICOM abstractions for Python, including segmentations, structured reports and annotations.

• Horos (⭐643) - Medical image viewer.

• MedPy (⭐623) - Python library for medical image processing, supporting DICOM and NIfTI formats with tools for segmentation, filtering, and feature extraction.

• mercure (⭐104) - DICOM orchestrator for routing and processing imaging studies.

• MONAI Label (⭐908) - AI-assisted image labeling tool that works with 3D Slicer and OHIF.

• PyMedPhys (⭐368) - Community library for medical physics.

• QuPath (⭐1.5k) - Bioimage analysis and whole slide image analysis for digital pathology.

• SlicerDMRI (⭐86) - Extension for 3D Slicer focused on diffusion MRI analysis and visualization, supporting neuroscience research.

• Weasis (⭐1.4k) - Standalone and web-based DICOM viewer.

Contents / Dental

• DentalPin (⭐110) - Dental practice management with an AI agent that runs real operations.

Contents / Laboratory

• MISO (⭐316) - Laboratory information management system for NGS sequencing centres.

Contents / Frameworks

• CHT - Community Health Toolkit - set of Open Source tools that support community healthcare

• HAPI FHIR JPA Server Starter (⭐544) - Ready-to-deploy FHIR server built on HAPI FHIR.

• Helios FHIR Server (⭐57) - FHIR server written in Rust, optimized for clinical analytics workloads.

• Opal (⭐288) - Framework for building clinical applications.

• Spezi (⭐261) - Stanford framework for building interoperable digital health apps on Apple platforms.

Contents / Libraries

• dcmjs (⭐356) - JavaScript implementation of DICOM manipulation.

• deid (⭐182) - De-identification of DICOM images in Python.

• dicom-rs (⭐570) - Rust implementation of the DICOM standard.

• fhir.resources (⭐543) - Pydantic-based FHIR resource models for Python.

• fhir-py (⭐218) - Async and sync FHIR client for Python.

• HealthChain (⭐230) - Python SDK for building healthcare AI applications with FHIR tools and real-time EHR connectivity.

• MITK - The Medical Imaging Interaction Toolkit.

• nHapi (⭐313) - .NET port of the HAPI HL7 v2 library.

• nhs-number (⭐6) - A Clojure/Script library providing validation, formatting and generation of UK NHS Numbers

• nhs-number (⭐14) - Python package to provide utilities for NHS Numbers, including validity checks, normalisation, and generation.

• Pydicom (⭐2.2k) - Pure Python package for working with DICOM files, enabling reading, writing, and manipulation of medical imaging data.

• sct (⭐32) - File-based SNOMED-CT toolset built in Rust.

• SMART on FHIR JavaScript client (⭐355) - JavaScript client for SMART on FHIR apps.

Contents / Applications

• AirwayLab (⭐45) - Browser-based airway analysis dashboard for PAP therapy users with flow limitation scoring, breathing pattern analysis, and oximetry metrics.

• CommCare HQ (⭐525) - Server for CommCare, a mobile data collection platform for frontline health workers.

• MedTimer (⭐649) - Medication reminder and tracking app for Android.

• OpenSRP FHIR Core (⭐70) - Offline-capable Android app for community health workers, built on the Android FHIR SDK.

• RCPCH Digital Growth Charts - Open source Digital Growth Charts platform with API, CLI, Python package, React chart components.

• SORMAS (⭐334) - Surveillance, outbreak response management and analysis system.

Contents / PHR

• AndroidAPS (⭐1.2k) - Open source automated insulin delivery system for Android.

• Loop (⭐1.8k) - Automated insulin delivery app for iOS.

• Nightscout (⭐2.9k) - Web monitor for continuous glucose monitor data.

• OpenHealth (⭐4k) - Privacy-first AI health assistant that interprets personal health data (blood tests, checkups, family history, symptoms) with local LLM support via Ollama.

• Trio (⭐419) - Automated insulin delivery system for iOS based on the OpenAPS algorithm.

• xDrip+ (⭐1.8k) - Android app for collecting and displaying continuous glucose monitor data.

Contents / Research

• admiral (⭐324) - R package from pharmaverse for creating ADaM clinical trial datasets.

• LibreClinica (⭐83) - Electronic data capture for clinical trials, community successor of OpenClinica.

• OHDSI ATLAS (⭐335) - Web tool for observational research on OMOP CDM data.

Contents / Integration

• LinuxForHealth HL7v2-FHIR Converter (⭐110) - Converts HL7 v2 messages to FHIR resources.

• mirthSync (⭐104) - CLI for putting Mirth Connect and Open Integration Engine configuration under version control.

• Open Integration Engine (⭐240) - Community open source fork of Mirth Connect.

Contents / Bioinformatics

• cBioPortal (⭐1.1k) - Platform for exploring and visualizing cancer genomics data.

• GATK (⭐2k) - Broad Institute toolkit for variant discovery in high-throughput sequencing data.

• Hail (⭐1.1k) - Scalable genomic data analysis.

• nf-core/sarek (⭐616) - Pipeline to detect germline and somatic variants from sequencing data.

• scikit-bio (⭐1.3k) - Python library for bioinformatics, providing tools for sequence analysis, microbiome studies, and statistical analysis of biological data.

Contents / Data

• DHIS2 (⭐360) - Health information management platform used by national health systems.

• medspaCy (⭐684) - Library for clinical NLP with spaCy.

• OpenMRS FHIR Analytics (⭐228) - Pipeline tools for transforming OpenMRS data to FHIR-based analytics using Apache Beam.

• Pathling (⭐140) - FHIR and clinical terminology analytics on Apache Spark.

• Snowstorm (⭐399) - SNOMED International's SNOMED CT terminology server.

• Tuva (⭐333) - Open source data model, data marts and data quality tests for claims and clinical data.

Contents / Machine learning

• nnU-Net (⭐9k) - Self-configuring deep learning framework for biomedical image segmentation.

• Odyssey (⭐63) - Interpretable foundation model of the patient clinical timeline for event forecasting and time-to-event prediction.

• OpenMed (⭐5.8k) - Local clinical named-entity recognition and PHI de-identification models.

• PathML (⭐467) - Python library for digital pathology image analysis, providing tools for preprocessing, model training, and analysis of histological slides.

• seismometer (⭐272) - Epic's framework for evaluating AI models in healthcare.

• TorchIO (⭐2.5k) - Medical image preprocessing and augmentation for deep learning.

• TotalSegmentator (⭐3.1k) - Segmentation of more than 100 anatomical structures in CT and MR images.

Contents / Compliance

• HealthStack (⭐94) - Terraform modules for secure and compliant healthcare infrastructure on AWS.

May 11 - May 17, 2026

Contents / EHR

• Ottehr (⭐343) - Modular, Production-Ready, Open-Source EHR

Feb 09 - Feb 15, 2026

Contents / Scribe

• OpenScribe (⭐224) - Open source, local-first medical scribe platform for recording clinical encounters, transcribing audio, and generating structured draft clinical notes.

Contents / Libraries

• Scanpy - Single-cell RNA-seq analysis library in Python.

Contents / Integration

• OpenWearables (⭐2.7k) - Self-hosted platform to unify wearable health data through one AI-ready API.

Contents / Bioinformatics

• FlashDeconv (⭐26) - High-performance spatial transcriptomics deconvolution for cell type mapping in tissue samples.

May 20 - May 26, 2024

Contents / Libraries

• Metriport (⭐797) - Open-source universal API for healthcare data.

Feb 12 - Feb 18, 2024

Contents / Frameworks

• Inferno - providing testing tools for the FHIR

Contents / Telemedicine

• Healthcare worker at home - ​ Open Source Telehealth software

Contents / Research

• LabKey Server - Platform for Translational Research.

Jul 24 - Jul 30, 2023

Contents / EHR

• ERPNext (⭐41k) - Modules that help manage patients, appointments, consultations, lab tests, and billing.

• HOSxP - Thai Hospital Information System that aims to ease the healthcare workflow of health centers and central hospitals.

Contents / Laboratory

• OpenELIS - Laboratory Information System for Global Health.

Contents / Frameworks

• CyclOps (⭐97) - Framework for healthcare ML implementation.

Contents / Applications

• Simple - For clinicians to track patients with high blood pressure.

Contents / Books

• Inspired EHRs (⭐134) - Ideas, designs, and techniques for designing an Electronic Health Record (EHR).

Contents / Data

• EDS_NLP (⭐167) - provides a set of spaCy components to extract information from clinical notes written in French

• eds-scikit (⭐45) - a tool to assist data scientists working on the AP-HP's Clinical Data Warehouse. It is specifically targeted for OMOP-standardized data.

Contents / Design

• Determinants of Health (⭐95) - Determinants of Health Visualization.

• Health Icons (⭐879) - A collection of open source icons for public health projects.

Contents / Machine learning

• MedicalGPT (⭐5.9k) - Training Your Own Medical GPT Model with ChatGPT Training Pipeline.

• PyHealth (⭐1.7k) - A Deep Learning Python Toolkit for Healthcare Application.

Contents / Logistics

• OpenBoxes (⭐920) - an Open Source Inventory and Supply Chain Management System.

May 22 - May 28, 2023

Contents / Frameworks

• Medblocks UI (⭐74) - Web Components for rapid development of openEHR and FHIR systems.

Contents / Libraries

• Datamol (⭐557) - Molecular Manipulation Made Easy. A light Python wrapper build on top of RDKit.

Contents / Data

• Atlas BI Library (⭐17) The unified report library.

Jan 30 - Feb 05, 2023

Contents / Libraries

• Graphir (⭐63) - GraphQL interface over FHIR API

Jan 16 - Jan 22, 2023

Contents / EHR

• Ozone HIS - The entreprise-grade integrated health information system built with OpenMRS 3

Contents / Imaging

• Slim (⭐173) - Interoperable web viewer and annotation tool for computational pathology.

Contents / Libraries

• ehrapy (⭐369) - Electronic Health Record analysis in Python.

• Hermes (⭐239) - a SNOMED CT terminology server.

Dec 05 - Dec 11, 2022

Contents / EHR

• Medplum (⭐2.8k) - Developer platform that enables flexible and rapid development of healthcare apps.

Contents / Specifications

• OHDSI OMOP Common Data Model - Standardized data model for many healthcare concepts, awesome Github presence including scripts for many major relational databases.

Contents / Imaging

• Omero (⭐222) - open source client/server system written in Java for visualizing, managing, and annotating microscope images and metadata

• OpenSlide (⭐518) - is a C library for reading whole slide image files.

• Viv (⭐372) - multiscale visualization of high-resolution multiplexed bioimaging data on the web.

Contents / Libraries

• Rust FHIR (⭐17) - Rust SDK for HL7 FHIR

Contents / Data

• Cedar (⭐8) - Open source tool for testing the strength of Electronic Clinical Quality Measure.

Aug 29 - Sep 04, 2022

Contents / Integration

• Zato - A Python-based ESB and integration platform for healthcare interoperability, automation and orchestration.

Aug 15 - Aug 21, 2022

Contents / Imaging

• Kheops - Open source platform for sharing medical images

Aug 01 - Aug 07, 2022

Contents / Imaging

• Kaapana (⭐276) - Open source toolkit for state of the art platform provisioning in the field of medical data analysis.

Contents / Frameworks

• LinuxForHealth FHIR Server (⭐375) - Modular Java implementation of version 4 of the HL7 FHIR specification.

Contents / Libraries

• Asymmetrik FHIR API Server (⭐415) - A secure REST implementation for the HL7 FHIR Specification.

Jul 11 - Jul 17, 2022

Contents / Libraries

• Python 835 Parser (⭐113) - A simple-to-use Python interface to EDI 835 Health Care Claim Payment and Remittance Advice files.

Jun 06 - Jun 12, 2022

Contents / Frameworks

• Clinical Quality Language (⭐338) - Clinical Quality Language is a HL7 standard for the expression of clinical knowledge.

Contents / Libraries

• Android FHIR SDK (⭐608) - The Android FHIR SDK

• FHIRKit Client (⭐188) - Node FHIR client library.

• FHIRModels (⭐210) - FHIRModels is a Swift library for FHIR resource data models.

Contents / Integration

• Open eHealth Integration Platform (⭐194) - An extension of the Apache Camel routing and mediation engine

May 02 - May 08, 2022

Contents / Frameworks

• Blaze (⭐231) - A FHIR Store with internal, fast CQL Evaluation Engine

• Sushi (⭐190) - a reference implementation command-line interpreter/compiler for FHIR

Contents / Integration

• Google HCLS Data Harmonization (⭐250) - an engine that converts data of one structure to another

Mar 14 - Mar 20, 2022

Contents / EHR

• Ripple - NHS-funded, community led initiative working towards an integrated Digital Care Record Platform.

Contents / Imaging

• Dicoogle (⭐535) - Dicoogle is an extensible, platform-independent and open-source PACS

Contents / Machine learning

• MONAI (⭐8.8k) - AI Toolkit for Healthcare Imaging.

Mar 07 - Mar 13, 2022

Contents / Libraries

• TorchXRayVision (⭐1.2k) - A library for chest X-ray datasets and models. Including pre-trained models.

Aug 09 - Aug 15, 2021

Contents / Imaging

• DICOMcloud (⭐235) - A standalone DICOMweb server with RESTful implementation of the DICOMweb/WADO services.

• DICOM Server (⭐516) - OSS Implementation of DICOMweb standard.

• Fiji - Open-source platform for biological-image analysis.

Contents / Frameworks

• FHIR Proxy (⭐75) - secure application that acts as an intermediary in the transfer of FHIR data to and from Azure API.

• FHIR Works on AWS (⭐302) - FHIR Works on AWS deployment.

Contents / Integration

• FHIR Converter (⭐532) - an open source project that enables conversion of health data from legacy formats to FHIR.

Contents / Data

• OpenSAFELY - Secure analytics platform for Electronic Health Records in the NHS.

Apr 12 - Apr 18, 2021

Contents / EHR

• HospitalRun - Helps provide the most modern Hospital Information System possible to the least resourced environments.

Contents / Specifications

• DICOM Standards Browser - Provides an effective way to learn the DICOM standard and inspect DICOM attributes.

Contents / Imaging

• Drishti (⭐205) - Tomography and electron-microscopy data visualizer for both scientists and lay people.

Contents / Frameworks

• CareKit (⭐2.5k) - Open source software framework for creating apps that help people better understand and manage their health.

Contents / Libraries

• Evil-DICOM (⭐193) - C# DICOM Library.

• Python SMART on FHIR client (⭐697) - Flexible Python client for FHIR servers supporting the SMART on FHIR protocol.

Contents / Applications

• Intervention Engine (⭐35) - Provides a web-application for data-driven team huddles.

Contents / Datasets

• Medical Data for Machine Learning (⭐6k) - Curated list of medical data for machine learning.

Apr 05 - Apr 11, 2021

Contents / EHR

• Bahmni - Electronic Medical Record and hospital system.

• EHRBase OpenEHR Clinical Data Repository.

• EHRServer (⭐207) - CaboLabs EHRServer.

• OSCAR EMR - OSCAR McMaster Project.

Contents / Specifications

• OpenEHR - Open specification upon which software can be built.

Contents / Imaging

• OHIF (⭐4.4k) - OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker.

Contents / Dental

• Open Dental - Dental Practice Management Software.

Contents / Frameworks

• API Server (⭐113) - FHIR Server to support patient- and clinician-facing apps.

• Clinical Meteor project - Meteor for FDA, HIPAA, and HL7 compliant applications.

Contents / Libraries

• Archie (⭐71) - OpenEHR Library written in Java.

• DCMTK - DICOM Toolkit.

• dicom (⭐1.1k) - High Performance DICOM Medical Image Parser in GoLang.

• Fellow Oak DICOM (⭐1.2k) - DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono, and Unity.

• FHIR protocol buffers (⭐963) - A Google implementation of protocol buffers for FHIR.

• php-fhir (⭐152) - Tools for creating PHP classes from the HL7 FHIR Specification.

• pynetdicom (⭐577) - A Python implementation of the DICOM networking protocol.

Contents / Logistics

• OpenLMIS - Open source, web-based, electronic logistics management information system (LMIS) software, purpose-built to manage health commodity supply chains.

Jan 04 - Jan 10, 2021

Contents / Imaging

• InVesalius - Open source software for reconstruction of computed tomography and magnetic ressonance images.

Contents / Libraries

• FHIR .NET API (⭐941) - The official .NET API for HL7 FHIR.

• HAPI FHIR (⭐2.4k) - Java API for HL7 FHIR Clients and Servers.

Contents / Asset Management

• Tapirx (⭐42) - Networked medical device discovery and identification.

Contents / Logistics

• ID3C (⭐22) - Data logistics system enabling real-time genomic epidemiology.

Oct 12 - Oct 18, 2020

Contents / EHR

• FreeMedForms EMR - Electronic Medical Record software.

• GNU Health - Electronic Health Record, Hospital Management, and Health Information System.

• LibreHealth EHR - Clinically-focused Electronic Health Record System.

• OpenClinic (⭐39) - Medical Records System.

• OpenEMR - Electronic Health Records and Medical Practice Management application.

• OpenEyes - Electronic Medical Record application for ophthalmology.

• OpenMRS - Enterprise Electronic Medical Record System platform.

Contents / Specifications

• Continuity of Care Document - Continuity of Care Document specifications

• HL7 Version 2 - Specifications for all versions of HL7v2

• Open mHealth - Open Standard For Mobile Health Data.

• SMART on FHIR - Open standards based technology platform.

Contents / Imaging

• dcm4che - Clinical Image and Object Management.

• LibreHealth Radiology - Customized version of LibreHealth Toolkit with additional tools for radiology and imaging professionals.

• OpenREM - Radiation Exposure Monitoring for physicists.

• Orthanc - Lightweight DICOM server for healthcare and medical research.

• VTK - 3 dimensional visualization toolkit supporting a variety of algorithms and modeling techniques.

Contents / Dental

• OpenMolar - Dental Practice Management Software.

Contents / Frameworks

• FHIRBase - Storage based on the FHIR Standard.

• Spark (⭐285) - Public domain FHIR server developed in C#.

Contents / Integration

• NextGen Connect Integration Engine (⭐1.2k) - The swiss army knife of healthcare integration.

Contents / Bioinformatics

• Bcbio (⭐1k) - Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis.

• Wregex - Amino acid motif searching software with optional Position-Specific Scoring Matrix.

Contents / Data

• cTAKES - Natural Language Processing System for extraction of information from Electronic Medical Record clinical free-text.

• Snow Owl (⭐292) - Highly scalable, open source terminology server with revision-control capabilities and collaborative authoring platform features.

Sep 14 - Sep 20, 2020

Contents / EHR

• Cottage Med - Electronic Medical Record software designed by physicians.

Contents / Nursing

• open-eObs - Observation and clinical assessment platform that offers a real-time view of all patients across a ward.

Contents / Data

• IHRIS - Health Information System for management of human resources for health.

Jun 29 - Jul 05, 2020

Contents / EHR

• GNUmed - Electronic Medical Record software.

Apr 15 - Apr 21, 2019

Contents / Frameworks

• FHIR Server for Azure (⭐1.4k) - A .NET Core implementation of the FHIR standard.

Nov 26 - Dec 02, 2018

Contents / Libraries

• Hearth (⭐26) - A fast FHIR-compliant server focused on longitudinal data stores.

Oct 29 - Nov 04, 2018

Contents / Libraries

• Node-hl7-parser (⭐53) - Open source version of Redox's HL7 v2 to schema-fied JSON parser.

Feb 26 - Mar 04, 2018

Contents / Laboratory

• SENAITE - Laboratory Information Management System.

Feb 12 - Feb 18, 2018

Contents / Imaging

• DICOM Web Viewer - JavaScript/HTML5-based DICOM viewer with standard tools and a focus on supporting various screen sizes.

Feb 05 - Feb 11, 2018

Contents / PHR

• HealthLocker (⭐72) - Elixir-based personal health record.

Dec 04 - Dec 10, 2017

Contents / Imaging

• Papaya (⭐582) - Pure JavaScript medical research image viewer.

May 15 - May 21, 2017

Contents / EMPI

• MEDIC Client Registry RI (⭐15) - The Mohawk College MARC-HI/MEDIC Client Registry EMPI Implementation.

Apr 17 - Apr 23, 2017

Contents / Imaging

• 3D Slicer - Cross-platform application for analyzing, visualizing and understanding medical image data.

• ITK - Toolkit used for the development of image segmentation and image registration programs with leading-edge algorithms in 2 and 3 dimensions.

• ITK-SNAP - Interactive software for 3 dimensional image navigation, annotation, and automatic segmentation with an emphasis on user-friendliness.

Contents / Libraries

• Health data standards (⭐0) - Ruby library for generating and consuming various healthcare related formats. These include HITSP C32, QRDA Category I, and QRDA Category III.

Contents / Hardware

• OpenAPS - The Open Artificial Pancreas System project is an open and transparent effort to make safe and effective basic Artificial Pancreas System.

Contents / Data

• Synthea Patient Generator (⭐3.4k) - Synthetic patient generator that models the medical history of synthetic patients.

Apr 10 - Apr 16, 2017

Contents / Frameworks

• Intervention Engine FHIR Server (⭐113) - Generic FHIR server implementation in GoLang.

• Swift-SMART (⭐140) - Swift SMART on FHIR framework for iOS and OS X.

Mar 27 - Apr 02, 2017

Contents / EHR

• Odoo Medical (⭐297) - Universal Health and Hospital Information System.

• openMAXIMS (⭐64) - Full Patient Administration System designed for the NHS.

Contents / Specifications

• FHIR - Fast Health Interoperability Resources.

Contents / Frameworks

• ResearchKit (⭐5.8k) - Software framework that makes it easy to create apps for medical research or for other research projects.

Contents / Libraries

• fhir.js (⭐438) - JavaScript client for FHIR.

• Node HL7 (⭐59) - Node module that is bridged with the Java Hapi HL7 library.

• Python HL7 (⭐318) - Simple library for parsing messages of HL7 version 2.x into Python objects.

• Ruby FHIR (⭐176) - FHIR client implementation in Ruby.

• Ruby HL7 (⭐96) - Ruby HL7 library.

Contents / Applications

• SMART Pediatric Growth Chart (⭐71) - Pediatric growth charts.

Contents / PHR

• Tidepool - Data platform to reduce the burden of Type 1 Diabetes.

Contents / Research

• i2b2 - Research data warehouse.

Contents / Integration

• OpenHIM - Health information mediator.

Contents / Hardware

• Gluco (⭐52) - Glucometer.

• Murgen - Ultrasound imaging development kit.

Contents / Bioinformatics

• ADAM (⭐1.1k) - Genomics analysis platform.

• Galaxy - Open web-based platform for data intensive biomedical research.