Track Awesome Healthcare Updates Weekly

Curated list of awesome open source healthcare software, libraries, tools and resources.

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[ Daily / Weekly / Overview ]

Feb 12 - Feb 18, 2024

Contents / EHR

• Akello - Integrated Mental Health Infrastructure

Contents / Frameworks

• Inferno - providing testing tools for the FHIR

Contents / Libraries

• nhs-numbers (⭐5) - Python package to provide utilities for NHS Numbers, including validity checks, normalisation, and generation.

Contents / PHR

• Fasten Health (⭐1.2k) - open-source, self-hosted, personal/family electronic medical record aggregator

Contents / Telemedicine

• Healthcare worker at home - ​ Open Source Telehealth software

Contents / Research

• LabKey Server - Platform for Translational Research.

Jul 24 - Jul 30, 2023

Contents / EHR

• ERPNext (⭐16k) - Modules that help manage patients, appointments, consultations, lab tests, and billing.

• HOSxP - Thai Hospital Information System that aims to ease the healthcare workflow of health centers and central hospitals.

Contents / Laboratory

• OpenELIS - Laboratory Information System for Global Health.

Contents / Frameworks

• CyclOps (⭐61) - Framework for healthcare ML implementation.

Contents / Applications

• Simple - For clinicians to track patients with high blood pressure.

Contents / Books

• Inspired EHRs (⭐109) - Ideas, designs, and techniques for designing an Electronic Health Record (EHR).

Contents / Data

• EDS_NLP (⭐94) - provides a set of spaCy components to extract information from clinical notes written in French

• eds-scikit (⭐31) - a tool to assist data scientists working on the AP-HP's Clinical Data Warehouse. It is specifically targeted for OMOP-standardized data.

Contents / Design

• Determinants of Health (⭐67) - Determinants of Health Visualization.

• Health Icons (⭐599) - A collection of open source icons for public health projects.

Contents / Machine learning

• MedicalGPT (⭐2.2k) - Training Your Own Medical GPT Model with ChatGPT Training Pipeline.

• PyHealth (⭐842) - A Deep Learning Python Toolkit for Healthcare Application.

Contents / Logistics

• OpenBoxes (⭐571) - an Open Source Inventory and Supply Chain Management System.

May 22 - May 28, 2023

Contents / Frameworks

• Medblocks UI (⭐46) - Web Components for rapid development of openEHR and FHIR systems.

Contents / Libraries

• Datamol (⭐409) - Molecular Manipulation Made Easy. A light Python wrapper build on top of RDKit.

Contents / Data

• Atlas BI Library (⭐13) The unified report library.

Jan 30 - Feb 05, 2023

Contents / Libraries

• Graphir (⭐50) - GraphQL interface over FHIR API

Jan 16 - Jan 22, 2023

Contents / EHR

• Ozone HIS - The entreprise-grade integrated health information system built with OpenMRS 3

Contents / Imaging

• Slim (⭐100) - Interoperable web viewer and annotation tool for computational pathology.

Contents / Libraries

• ehrapy (⭐100) - Electronic Health Record analysis in Python.

• Hermes (⭐158) - a SNOMED CT terminology server.

Dec 05 - Dec 11, 2022

Contents / EHR

• Medplum (⭐1.1k) - Developer platform that enables flexible and rapid development of healthcare apps.

Contents / Specifications

• OHDSI OMOP Common Data Model - Standardized data model for many healthcare concepts, awesome Github presence including scripts for many major relational databases.

Contents / Imaging

• Omero (⭐185) - open source client/server system written in Java for visualizing, managing, and annotating microscope images and metadata

• OpenSlide (⭐370) - is a C library for reading whole slide image files.

• Viv (⭐247) - multiscale visualization of high-resolution multiplexed bioimaging data on the web.

Contents / Libraries

• Rust FHIR (⭐13) - Rust SDK for HL7 FHIR

Contents / Data

• Cedar (⭐8) - Open source tool for testing the strength of Electronic Clinical Quality Measure.

Aug 29 - Sep 04, 2022

Contents / Integration

• Zato - A Python-based ESB and integration platform for healthcare interoperability, automation and orchestration.

Aug 15 - Aug 21, 2022

Contents / Imaging

• Kheops - Open source platform for sharing medical images

Aug 01 - Aug 07, 2022

Contents / Imaging

• Kaapana (⭐137) - Open source toolkit for state of the art platform provisioning in the field of medical data analysis.

Contents / Frameworks

• LinuxForHealth FHIR Server (⭐301) - Modular Java implementation of version 4 of the HL7 FHIR specification.

Contents / Libraries

• Asymmetrik FHIR API Server (⭐368) - A secure REST implementation for the HL7 FHIR Specification.

Jul 11 - Jul 17, 2022

Contents / Libraries

• Python 835 Parser (⭐57) - A simple-to-use Python interface to EDI 835 Health Care Claim Payment and Remittance Advice files.

Jun 06 - Jun 12, 2022

Contents / Frameworks

• Clinical Quality Language (⭐240) - Clinical Quality Language is a HL7 standard for the expression of clinical knowledge.

Contents / Libraries

• Android FHIR SDK (⭐424) - The Android FHIR SDK

• FHIRKit Client (⭐160) - Node FHIR client library.

• FHIRModels (⭐165) - FHIRModels is a Swift library for FHIR resource data models.

Contents / Integration

• Open eHealth Integration Platform (⭐161) - An extension of the Apache Camel routing and mediation engine

May 02 - May 08, 2022

Contents / Frameworks

• Blaze (⭐125) - A FHIR Store with internal, fast CQL Evaluation Engine

• Sushi (⭐119) - a reference implementation command-line interpreter/compiler for FHIR

Contents / Integration

• Google HCLS Data Harmonization (⭐186) - an engine that converts data of one structure to another

Mar 14 - Mar 20, 2022

Contents / EHR

• Ripple - NHS-funded, community led initiative working towards an integrated Digital Care Record Platform.

Contents / Imaging

• Dicoogle (⭐402) - Dicoogle is an extensible, platform-independent and open-source PACS

Contents / Machine learning

• MONAI (⭐5k) - AI Toolkit for Healthcare Imaging.

Mar 07 - Mar 13, 2022

Contents / Libraries

• TorchXRayVision (⭐797) - A library for chest X-ray datasets and models. Including pre-trained models.

Aug 09 - Aug 15, 2021

Contents / Imaging

• DICOMcloud (⭐214) - A standalone DICOMweb server with RESTful implementation of the DICOMweb/WADO services.

• DICOM Server (⭐411) - OSS Implementation of DICOMweb standard.

• Fiji - Open-source platform for biological-image analysis.

Contents / Frameworks

• FHIR Proxy (⭐69) - secure application that acts as an intermediary in the transfer of FHIR data to and from Azure API.

• FHIR Works on AWS (⭐296) - FHIR Works on AWS deployment.

Contents / Integration

• FHIR Converter (⭐350) - an open source project that enables conversion of health data from legacy formats to FHIR.

Contents / Data

• OpenSAFELY - Secure analytics platform for Electronic Health Records in the NHS.

Apr 12 - Apr 18, 2021

Contents / EHR

• HospitalRun - Helps provide the most modern Hospital Information System possible to the least resourced environments.

Contents / Specifications

• DICOM Standards Browser - Provides an effective way to learn the DICOM standard and inspect DICOM attributes.

Contents / Imaging

• Cornerstone (⭐2k) - Open source project with a goal to deliver a complete web based medical imaging platform.

• Drishti (⭐164) - Tomography and electron-microscopy data visualizer for both scientists and lay people.

Contents / Frameworks

• CareKit (⭐2.4k) - Open source software framework for creating apps that help people better understand and manage their health.

Contents / Libraries

• Evil-DICOM (⭐163) - C# DICOM Library.

• Python SMART on FHIR client (⭐534) - Flexible Python client for FHIR servers supporting the SMART on FHIR protocol.

Contents / Applications

• Intervention Engine (⭐29) - Provides a web-application for data-driven team huddles.

Contents / Datasets

• Medical Data for Machine Learning (⭐5.7k) - Curated list of medical data for machine learning.

Apr 05 - Apr 11, 2021

Contents / EHR

• Bahmni - Electronic Medical Record and hospital system.

• EHRBase OpenEHR Clinical Data Repository.

• EHRServer (⭐160) - CaboLabs EHRServer.

• OSCAR EMR - OSCAR McMaster Project.

Contents / Specifications

• OpenEHR - Open specification upon which software can be built.

Contents / Imaging

• OHIF (⭐2.8k) - OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker.

Contents / Dental

• Open Dental - Dental Practice Management Software.

Contents / Frameworks

• API Server (⭐104) - FHIR Server to support patient- and clinician-facing apps.

• Clinical Meteor project - Meteor for FDA, HIPAA, and HL7 compliant applications.

Contents / Libraries

• Archie (⭐47) - OpenEHR Library written in Java.

• DCMTK - DICOM Toolkit.

• dicom (⭐874) - High Performance DICOM Medical Image Parser in GoLang.

• Fellow Oak DICOM (⭐993) - DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono, and Unity.

• FHIR protocol buffers (⭐771) - A Google implementation of protocol buffers for FHIR.

• php-fhir (⭐109) - Tools for creating PHP classes from the HL7 FHIR Specification.

• pynetdicom (⭐463) - A Python implementation of the DICOM networking protocol.

Contents / Machine learning

• Healthcare.ai - Python and R tools for healthcare machine learning.

Contents / Logistics

• OpenLMIS - Open source, web-based, electronic logistics management information system (LMIS) software, purpose-built to manage health commodity supply chains.

Jan 04 - Jan 10, 2021

Contents / Imaging

• InVesalius - Open source software for reconstruction of computed tomography and magnetic ressonance images.

Contents / Libraries

• FHIR .NET API (⭐782) - The official .NET API for HL7 FHIR.

• HAPI FHIR (⭐1.9k) - Java API for HL7 FHIR Clients and Servers.

Contents / Asset Management

• Tapirx (⭐28) - Networked medical device discovery and identification.

Contents / Logistics

• ID3C (⭐22) - Data logistics system enabling real-time genomic epidemiology.

Oct 12 - Oct 18, 2020

Contents / EHR

• GNU Health - Electronic Medical Record, Hospital Management, and Health Information System.

• FreeMedForms EMR - Electronic Medical Record software.

• LibreHealth EHR - Clinically-focused Electronic Health Record System.

• OpenClinic (⭐28) - Medical Records System.

• OpenEMR - Electronic Health Records and Medical Practice Management application.

• OpenEyes - Electronic Medical Record application for ophthalmology.

• OpenMRS - Enterprise Electronic Medical Record System platform.

Contents / Specifications

• Continuity of Care Document - Continuity of Care Document specifications

• HL7 Version 2 - Specifications for all versions of HL7v2

• Open mHealth - Open Standard For Mobile Health Data.

• SMART on FHIR - Open standards based technology platform.

Contents / Imaging

• dcm4che - Clinical Image and Object Management.

• Horos - Medical image viewer.

• LibreHealth Radiology - Customized version of LibreHealth Toolkit with additional tools for radiology and imaging professionals.

• OpenREM - Radiation Exposure Monitoring for physicists.

• Orthanc - Lightweight DICOM server for healthcare and medical research.

• VTK - 3 dimensional visualization toolkit supporting a variety of algorithms and modeling techniques.

Contents / Dental

• OpenMolar - Dental Practice Management Software.

Contents / Frameworks

• FHIRBase - Storage based on the FHIR Standard.

• Opal - Framework for building clinical applications.

• Spark (⭐240) - Public domain FHIR server developed in C#.

Contents / Libraries

• MITK - The Medical Imaging Interaction Toolkit.

Contents / Integration

• NextGen Connect Integration Engine (⭐810) - The swiss army knife of healthcare integration.

Contents / Bioinformatics

• Bcbio (⭐965) - Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis.

• Wregex - Amino acid motif searching software with optional Position-Specific Scoring Matrix.

Contents / Data

• cTAKES - Natural Language Processing System for extraction of information from Electronic Medical Record clinical free-text.

• Snow Owl (⭐244) - Highly scalable, open source terminology server with revision-control capabilities and collaborative authoring platform features.

Sep 14 - Sep 20, 2020

Contents / EHR

• Cottage Med - Electronic Medical Record software designed by physicians.

Contents / Nursing

• open-eObs - Observation and clinical assessment platform that offers a real-time view of all patients across a ward.

Contents / Data

• IHRIS - Health Information System for management of human resources for health.

Jun 29 - Jul 05, 2020

Contents / EHR

• GNUmed - Electronic Medical Record software.

Apr 15 - Apr 21, 2019

Contents / Frameworks

• FHIR Server for Azure (⭐1.1k) - A .NET Core implementation of the FHIR standard.

Nov 26 - Dec 02, 2018

Contents / Libraries

• Hearth (⭐26) - A fast FHIR-compliant server focused on longitudinal data stores.

Oct 29 - Nov 04, 2018

Contents / Libraries

• Node-hl7-parser (⭐40) - Open source version of Redox's HL7 v2 to schema-fied JSON parser.

Feb 26 - Mar 04, 2018

Contents / Laboratory

• SENAITE - Laboratory Information Management System.

Feb 12 - Feb 18, 2018

Contents / Imaging

• DICOM Web Viewer - JavaScript/HTML5-based DICOM viewer with standard tools and a focus on supporting various screen sizes.

Feb 05 - Feb 11, 2018

Contents / PHR

• HealthLocker (⭐72) - Elixir-based personal health record.

Dec 04 - Dec 10, 2017

Contents / Imaging

• Papaya (⭐519) - Pure JavaScript medical research image viewer.

May 15 - May 21, 2017

Contents / EMPI

• MEDIC Client Registry RI (⭐13) - The Mohawk College MARC-HI/MEDIC Client Registry EMPI Implementation.

Apr 17 - Apr 23, 2017

Contents / EHR

• MedinTux - French Medical Practice Management System.

• Open Hospital - Electronic Medical Record software for underprivileged rural hospitals.

Contents / Imaging

• 3D Slicer - Cross-platform application for analyzing, visualizing and understanding medical image data.

• ITK - Toolkit used for the development of image segmentation and image registration programs with leading-edge algorithms in 2 and 3 dimensions.

• ITK-SNAP - Interactive software for 3 dimensional image navigation, annotation, and automatic segmentation with an emphasis on user-friendliness.

Contents / Libraries

• Health data standards (⭐0) - Ruby library for generating and consuming various healthcare related formats. These include HITSP C32, QRDA Category I, and QRDA Category III.

Contents / Hardware

• OpenAPS - The Open Artificial Pancreas System project is an open and transparent effort to make safe and effective basic Artificial Pancreas System.

Contents / Data

• Caisis - Oncology research software with a Patient Data Management System.

• Synthea Patient Generator (⭐1.9k) - Synthetic patient generator that models the medical history of synthetic patients.

Apr 10 - Apr 16, 2017

Contents / Frameworks

• Intervention Engine FHIR Server (⭐108) - Generic FHIR server implementation in GoLang.

• Swift-SMART (⭐127) - Swift SMART on FHIR framework for iOS and OS X.

Mar 27 - Apr 02, 2017

Contents / EHR

• Odoo Medical (⭐253) - Universal Health and Hospital Information System.

• openMAXIMS (⭐59) - Full Patient Administration System designed for the NHS.

Contents / Specifications

• FHIR - Fast Health Interoperability Resources.

Contents / Prescribing

• OpenEP (⭐19) - Suite of medicines management apps that improve the safety and efficiency of prescribing and medicines management.

Contents / Frameworks

• ResearchKit (⭐5.6k) - Software framework that makes it easy to create apps for medical research or for other research projects.

Contents / Libraries

• fhir.js (⭐411) - JavaScript client for FHIR.

• Node HL7 (⭐54) - Node module that is bridged with the Java Hapi HL7 library.

• Python HL7 (⭐268) - Simple library for parsing messages of HL7 version 2.x into Python objects.

• Ruby FHIR (⭐154) - FHIR client implementation in Ruby.

• Ruby HL7 (⭐95) - Ruby HL7 library.

Contents / Applications

• SMART Pediatric Growth Chart (⭐66) - Pediatric growth charts.

Contents / PHR

• Tidepool - Data platform to reduce the burden of Type 1 Diabetes.

Contents / Research

• i2b2 - Research data warehouse.

Contents / Integration

• OpenHIM - Health information mediator.

Contents / Hardware

• Gluco (⭐29) - Glucometer.

• Murgen - Ultrasound imaging development kit.

Contents / Bioinformatics

• ADAM (⭐966) - Genomics analysis platform.

• Galaxy - Open web-based platform for data intensive biomedical research.